From electrons to stars : modelling and mitigation of radiation damage effects on astronomical CCDs

The work presented in this thesis is part of an on-going effort to understand and mitigate the effects of radiation damage in astronomical CCDs. My research was motivated by and took place in the challenging context of the European Space Agency__s (ESA) astrometric mission, Gaia, for which radiation damage has been considered since its conception as one of the most important threats to its scientific performance. In this context my research focused primarily on the modelling of the effects of radiation-induced Charge Transfer Inefficiency (CTI) supported by the analysis of the experimental test data. I developed the most detailed model to date of CTI in CCDs that enables simulating the operation of irradiated devices (Chapter 2). Using this model I have been able to verify and enhance our current understanding of CTI as well as support the characterization of CCDs and the understanding of experimental results (Chapters 3 and 6). As part of this research I conducted the comprehensive re-assessment of the performance of Gaia taking into account radiation damage (Chapters 3 and 4). Finally I took part in the effort of countering CTI by elaborating, testing, and improving a forward modelling approach at the image processing level to mitigate the CTI effects on the Gaia easurements (Chapters 3 and 5), as well as test and explore the potential of a specific hardware mitigation tool (Chapter 6).European Marie-Curie research training network ELSA (MRTN-CT-2006-033481)UBL - phd migration 201

Modelling Gaia CCD pixels with Silvaco 3D engineering software

Gaia will only achieve its unprecedented measurement accuracy requirements with detailed calibration and correction for radiation damage. We present our Silvaco 3D engineering software model of the Gaia CCD pixel and two of its applications for Gaia: (1) physically interpreting supplementary buried channel (SBC) capacity measurements (pocket-pumping and first pixel response) in terms of e2v manufacturing doping alignment tolerances; and (2) deriving electron densities within a charge packet as a function of the number of constituent electrons and 3D position within the charge packet as input to microscopic models being developed to simulate radiation damage.Comment: 4 pages, 3 figures, contributed poster, appearing in proceedings of the ELSA conference: Gaia, at the frontiers of astrometry, 7-11 June 2010, S\`evres, Pari

Detecting stars, galaxies, and asteroids with Gaia

(Abridged) Gaia aims to make a 3-dimensional map of 1,000 million stars in our Milky Way to unravel its kinematical, dynamical, and chemical structure and evolution. Gaia's on-board detection software discriminates stars from spurious objects like cosmic rays and Solar protons. For this, parametrised point-spread-function-shape criteria are used. This study aims to provide an optimum set of parameters for these filters. We developed an emulation of the on-board detection software, which has 20 free, so-called rejection parameters which govern the boundaries between stars on the one hand and sharp or extended events on the other hand. We evaluate the detection and rejection performance of the algorithm using catalogues of simulated single stars, double stars, cosmic rays, Solar protons, unresolved galaxies, and asteroids. We optimised the rejection parameters, improving - with respect to the functional baseline - the detection performance of single and double stars, while, at the same time, improving the rejection performance of cosmic rays and of Solar protons. We find that the minimum separation to resolve a close, equal-brightness double star is 0.23 arcsec in the along-scan and 0.70 arcsec in the across-scan direction, independent of the brightness of the primary. We find that, whereas the optimised rejection parameters have no significant impact on the detectability of de Vaucouleurs profiles, they do significantly improve the detection of exponential-disk profiles. We also find that the optimised rejection parameters provide detection gains for asteroids fainter than 20 mag and for fast-moving near-Earth objects fainter than 18 mag, albeit this gain comes at the expense of a modest detection-probability loss for bright, fast-moving near-Earth objects. The major side effect of the optimised parameters is that spurious ghosts in the wings of bright stars essentially pass unfiltered.Comment: Accepted for publication in A&

Digging supplementary buried channels: investigating the notch architecture within the CCD pixels on ESA's Gaia satellite

The European Space Agency (ESA) Gaia satellite has 106 CCD image sensors which will suffer from increased charge transfer inefficiency (CTI) as a result of radiation damage. To aid the mitigation at low signal levels, the CCD design includes Supplementary Buried Channels (SBCs, otherwise known as `notches') within each CCD column. We present the largest published sample of Gaia CCD SBC Full Well Capacity (FWC) laboratory measurements and simulations based on 13 devices. We find that Gaia CCDs manufactured post-2004 have SBCs with FWCs in the upper half of each CCD that are systematically smaller by two orders of magnitude (<50 electrons) compared to those manufactured pre-2004 (thousands of electrons). Gaia's faint star (13 < G < 20 mag) astrometric performance predictions by Prod'homme et al. and Holl et al. use pre-2004 SBC FWCs as inputs to their simulations. However, all the CCDs already integrated onto the satellite for the 2013 launch are post-2004. SBC FWC measurements are not available for one of our five post-2004 CCDs but the fact it meets Gaia's image location requirements suggests it has SBC FWCs similar to pre-2004. It is too late to measure the SBC FWCs onboard the satellite and it is not possible to theoretically predict them. Gaia's faint star astrometric performance predictions depend on knowledge of the onboard SBC FWCs but as these are currently unavailable, it is not known how representative of the whole focal plane the current predictions are. Therefore, we suggest Gaia's initial in-orbit calibrations should include measurement of the onboard SBC FWCs. We present a potential method to do this. Faint star astrometric performance predictions based on onboard SBC FWCs at the start of the mission would allow satellite operating conditions or CTI software mitigation to be further optimised to improve the scientific return of Gaia.Comment: Accepted for publication in MNRAS, 16 pages, 19 figure

Two novel human cytomegalovirus NK cell evasion functions target MICA for lysosomal degradation

NKG2D plays a major role in controlling immune responses through the regulation of natural killer (NK) cells, αβ and γδ T-cell function. This activating receptor recognizes eight distinct ligands (the MHC Class I polypeptide-related sequences (MIC) A andB, and UL16-binding proteins (ULBP)1–6) induced by cellular stress to promote recognition cells perturbed by malignant transformation or microbial infection. Studies into human cytomegalovirus (HCMV) have aided both the identification and characterization of NKG2D ligands (NKG2DLs). HCMV immediate early (IE) gene up regulates NKGDLs, and we now describe the differential activation of ULBP2 and MICA/B by IE1 and IE2 respectively. Despite activation by IE functions, HCMV effectively suppressed cell surface expression of NKGDLs through both the early and late phases of infection. The immune evasion functions UL16, UL142, and microRNA(miR)-UL112 are known to target NKG2DLs. While infection with a UL16 deletion mutant caused the expected increase in MICB and ULBP2 cell surface expression, deletion of UL142 did not have a similar impact on its target, MICA. We therefore performed a systematic screen of the viral genome to search of addition functions that targeted MICA. US18 and US20 were identified as novel NK cell evasion functions capable of acting independently to promote MICA degradation by lysosomal degradation. The most dramatic effect on MICA expression was achieved when US18 and US20 acted in concert. US18 and US20 are the first members of the US12 gene family to have been assigned a function. The US12 family has 10 members encoded sequentially through US12–US21; a genetic arrangement, which is suggestive of an ‘accordion’ expansion of an ancestral gene in response to a selective pressure. This expansion must have be an ancient event as the whole family is conserved across simian cytomegaloviruses from old world monkeys. The evolutionary benefit bestowed by the combinatorial effect of US18 and US20 on MICA may have contributed to sustaining the US12 gene family

On-orbit performance of the Gaia CCDs at L2

The European Space Agency's Gaia satellite was launched into orbit around L2 in December 2013 with a payload containing 106 large-format scientific CCDs. The primary goal of the mission is to repeatedly obtain high-precision astrometric and photometric measurements of one thousand million stars over the course of five years. The scientific value of the down-linked data, and the operation of the onboard autonomous detection chain, relies on the high performance of the detectors. As Gaia slowly rotates and scans the sky, the CCDs are continuously operated in a mode where the line clock rate and the satellite rotation spin-rate are in synchronisation. Nominal mission operations began in July 2014 and the first data release is being prepared for release at the end of Summer 2016. In this paper we present an overview of the focal plane, the detector system, and strategies for on-orbit performance monitoring of the system. This is followed by a presentation of the performance results based on analysis of data acquired during a two-year window beginning at payload switch-on. Results for parameters such as readout noise and electronic offset behaviour are presented and we pay particular attention to the effects of the L2 radiation environment on the devices. The radiation-induced degradation in the charge transfer efficiency (CTE) in the (parallel) scan direction is clearly diagnosed; however, an extrapolation shows that charge transfer inefficiency (CTI) effects at end of mission will be approximately an order of magnitude less than predicted pre-flight. It is shown that the CTI in the serial register (horizontal direction) is still dominated by the traps inherent to the manufacturing process and that the radiation-induced degradation so far is only a few per cent. Finally, we summarise some of the detector effects discovered on-orbit which are still being investigated.Comment: Published in A&A Gaia special featur

The Gaia mission

Gaia is a cornerstone mission in the science programme of the EuropeanSpace Agency (ESA). The spacecraft construction was approved in 2006, following a study in which the original interferometric concept was changed to a direct-imaging approach. Both the spacecraft and the payload were built by European industry. The involvement of the scientific community focusses on data processing for which the international Gaia Data Processing and Analysis Consortium (DPAC) was selected in 2007. Gaia was launched on 19 December 2013 and arrived at its operating point, the second Lagrange point of the Sun-Earth-Moon system, a few weeks later. The commissioning of the spacecraft and payload was completed on 19 July 2014. The nominal five-year mission started with four weeks of special, ecliptic-pole scanning and subsequently transferred into full-sky scanning mode. We recall the scientific goals of Gaia and give a description of the as-built spacecraft that is currently (mid-2016) being operated to achieve these goals. We pay special attention to the payload module, the performance of which is closely related to the scientific performance of the mission. We provide a summary of the commissioning activities and findings, followed by a description of the routine operational mode. We summarise scientific performance estimates on the basis of in-orbit operations. Several intermediate Gaia data releases are planned and the data can be retrieved from the Gaia Archive, which is available through the Gaia home page. http://www.cosmos.esa.int/gai

The XXL Survey . IV. Mass-temperature relation of the bright cluster sample

Part of the first data release of the XXL Survey. Associated data is accessible via CDS and via the XXL Database hosted at IASF-MIContext. The XXL Survey is the largest survey carried out by XMM-Newton. Covering an area of 50 deg2, the survey contains ~450 galaxy clusters out to a redshift ~2 and to an X-ray flux limit of ~ 5 × 10-15 erg s-1 cm-2. This paper is part of the first release of XXL results focussed on the bright cluster sample. Aims: We investigate the scaling relation between weak-lensing mass and X-ray temperature for the brightest clusters in XXL. The scaling relation discussed in this article is used to estimate the mass of all 100 clusters in XXL-100-GC. Methods: Based on a subsample of 38 objects that lie within the intersection of the northern XXL field and the publicly available CFHTLenS shear catalog, we derive the weak-lensing mass of each system with careful considerations of the systematics. The clusters lie at 0.1 Results: The mass-temperature relation fit (M ∝ Tb) to the XXL clusters returns a slope and intrinsic scatter σlnM|T≃ 0.53; the scatter is dominated by disturbed clusters. The fit to the combined sample of 96 clusters is in tension with self-similarity, b = 1.67 ± 0.12 and σlnM|T ≃ 0.41. Conclusions: Overall our results demonstrate the feasibility of ground-based weak-lensing scaling relation studies down to cool systems of ~1 keV temperature and highlight that the current data and samples are a limit to our statistical precision. As such we are unable to determine whether the validity of hydrostatic equilibrium is a function of halo mass. An enlarged sample of cool systems, deeper weak-lensing data, and robust modelling of the selection function will help to explore these issues further. Based on observations obtained with XMM-Newton, an ESA sci- ence mission with instruments and contributions directly funded by ESA Member States and NASA. Based on observations made with ESO Telescopes at the La Silla Paranal Observatory under programme 089.A-0666 and LP191.A-0268.The Master catalogue is available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/592/A

Variational approach to regularity of optimal transport maps : general cost functions

We extend the variational approach to regularity for optimal transport maps initiated by Goldman and the first author to the case of general cost functions. Our main result is an $\epsilon$-regularity result for optimal transport maps between H\"older continuous densities slightly more quantitative than the result by De Philippis-Figalli. One of the new contributions is the use of almost-minimality: if the cost is quantitatively close to the Euclidean cost function, a minimizer for the optimal transport problem with general cost is an almost-minimizer for the one with quadratic cost. This further highlights the connection between our variational approach and De Giorgi's strategy for $\epsilon$-regularity of minimal surfaces.Comment: In this version we added an extension of our main $\epsilon$-regularity result to general almost-minimisers (among optimal transport maps), see Theorem 1.18. 51 pages, 2 figure